# Welcome to Bio-OS

## Overview

Bio-OS is an open-source platform for genomics users. It provides a workspace which encapsulates data, workflows, Notebooks, job history, etc. Bio-OS provides both GUI and CLI(Command Line Interface) to quickly setup and run workflows specified by languages like WDL and notebook as well.

Bio-OS是一个面向基因组学用户的开源平台。它提供了一个封装数据、工作流、笔记本、工作历史等的工作空间。Bio-OS提供了GUI和CLI（命令行界面）来快速设置和运行由WDL和笔记本等语言指定的工作流。

### Bio-OS Concept

1. 开放性：通过社区开源和开放API接口构建跨领域、机构和地区的协作和生态
2. 云原生：基于云原生架构，支持Serverless容器的弹性编排和调度能力
3. 可扩展：通过在架构层面的“接口-实现”解耦合，实现不同程度的可扩展，从而让操作系统针对更多场景具有普适性
4. 标准化：符合国际标准的统一数据接口规范、流程语言规范，生信应用可迁移，生信数据可流转

<figure><img src="https://3090449544-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2F4vWbjtcmh3Zg2b5VZigY%2Fuploads%2FQ1qbHU3XXwZwnNf4Huqm%2Fimage.png?alt=media&#x26;token=b5698943-1e11-4205-bbce-0954c573ba02" alt=""><figcaption></figcaption></figure>

### Bio-OS Workspace

在Bio-OS生信操作系统中，workspace是对一次生信研究过程的完整封装，包括数据，环境，代码，操作计算过程和结果以及作为整体介绍的dashboard，是实现科学研究和临床应用可执行，可移植，可复现，可分享，可发表的基本单位。

<figure><img src="https://3090449544-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2F4vWbjtcmh3Zg2b5VZigY%2Fuploads%2Fnd8n0fFSA4akeChuwt1f%2Fimage.png?alt=media&#x26;token=5ed04bfc-cab3-4bf0-b424-695e08e6e7fa" alt=""><figcaption></figcaption></figure>

## Quick links

{% content-ref url="gai-lan" %}
[gai-lan](https://bio-os.gitbook.io/userguide/gai-lan)
{% endcontent-ref %}

{% content-ref url="chan-pin-zhi-nan/gong-zuo-kong-jian" %}
[gong-zuo-kong-jian](https://bio-os.gitbook.io/userguide/chan-pin-zhi-nan/gong-zuo-kong-jian)
{% endcontent-ref %}

{% content-ref url="chan-pin-zhi-nan/ming-ling-xing-gong-ju-bioctl" %}
[ming-ling-xing-gong-ju-bioctl](https://bio-os.gitbook.io/userguide/chan-pin-zhi-nan/ming-ling-xing-gong-ju-bioctl)
{% endcontent-ref %}

## Get Started

We've put together some helpful guides for you to get setup with our product quickly and easily.

{% content-ref url="bu-shu/getting-set-up" %}
[getting-set-up](https://bio-os.gitbook.io/userguide/bu-shu/getting-set-up)
{% endcontent-ref %}

{% content-ref url="bu-shu/getting-set-up/bu-shu-bioos" %}
[bu-shu-bioos](https://bio-os.gitbook.io/userguide/bu-shu/getting-set-up/bu-shu-bioos)
{% endcontent-ref %}
